Fix segfault in Bluegene setups where RebootQOSList is defined in bluegene.conf and accounting is not setup.

Read in correct number of nodes from SLURM_HOSTFILE when specifying nodes and --distribution=arbitrary.

Bug 1808

From eee63695

Bug 1810

No change in functionality

If node definitions in slurm.conf are spread across multiple lines
and topology/tree is configured, then sub-optimal node selection can
occur.
bug 1645

Rather than generating loads of log messages about too much time
being used to build the job queue every few seconds, log it only
every 10 minutes.
bug 1827

Log the number of job-partition pairs added to the queue for job
scheduling.
bug 1827

Previously only batch job completions were being captured.
bug 1820

This patch provides a rewrite of how /proc/cpuinfo is parsed in common_jag.c, as the original code made the incorrect assumption that cpuinfo follows a sane format across architectures ;-)

The motivation for this patch is that the original code was producing stack smashing on a POWER7 running RHEL6.4 Red Hat adds -fstack-protector along with a lot of other protective CFLAGS when building RPMs. The code ran okay with -fno-stack-protector, but that is not the best work-around.

So, the relevant /proc/cpuinfo line on an Intel (Xeon X5675) system looks like:

cpu MHz                : 3066.915

Whereas the relevant line in a POWER7 system is

clock                : 3550.000000MHz

My patch replaces the assumption that the relevant number starts 11 characters into the string with another assumption: That the relevant number starts two characters after a colon in a string that matches (M|G)Hz.

All in all, the function has a few more calls, which may be a performance issue if it has to be called multiple times, but since the section I edited only gets evaluated if we don't know the cpu frequency, getting it right will actually result in fewer string operations and unnecessary opens of /proc/cpuinfo for systems likewise affected.

Finally, I also read the actual value into a double and multiply it up to the size indicated by the suffix, so we end up with KHz? It was unclear what the original code intended, since it matched both MHz and GHz, replaced the decimal point with a zero, and read the result as an int.

--
Chandler Wilkerson
Center for Research Computing
Rice University

This reverts commit 2c95e2d2.

Conflicts:
	src/plugins/select/alps/basil_interface.c

This is related to bug 1822.  It isn't clear why the code was taken out in
this commit in the first place and based off of commit 2e2de6a4 (which is
the reason for the conflict) we tried unsuccessfully to put it back.

It appears the only difference here is the addition of
always setting mppnppn = 1 instead of always to
job_ptr->details->ntasks_per_node when no ntasks is set.

This appears to only be an issue with salloc or sbatch as ntasks
is always set for srun.

Prevent slurmctld abort on update of advanced reservation that contains no
    nodes.
bug 1814

Bug 1810

srun command line of either --mem or --mem-per-cpu will override both the
SLURM_MEM_PER_CPU and SLURM_MEM_PER_NODE environment variables.
Without this change, salloc or sbatch setting --mem-per-cpu (or a
configuration of DefMemPerCPU) would over-ride the step's --mem
value.

change was made.

when removing a limit from an association on multiple clusters
at the same time.

to gain the correct limit when a parent account is root and you
remove a subaccount's limit which exists on the parent account.

This fixes changes made in commit d4d51de7
Which fails for a job state of Pending (needed to special case the zero value).

abort if specified acct_gather_energy plugin can not be loaded
  rather than deadlocking
bug 1797

Under some conditions if an attempt to schedule the last task of
  a job array (the meta-record of the job array) fails, it's
  task ID will be changed from the appropriate value to NO_VAL.
bug 1790

Bug 1798

If a job can only be started by preempting other jobs, the old logic
  could report the error:
  "cons_res: sync loop not progressing, holding job #"
  due to the usable CPUs and GRES needed by the pending job not
  matching. This change prevents the error message and job hold
  when job preemption logic is being used. The error message and
  job hold still take place for job scheduling outside of preemption,
  which will match CPUs and GRES at the beginning.
bug 1750

Under some conditions the select/cons_res plugin will hold a job,
  setting it's priority to zero and reason to HELD. The logic in
  slurmctld's main scheduling loop previously kept its priority
  at zero, but changed the reason from HELD to RESOURCES. This
  change leaves the proper job state as set by the select plugin.
This may be related to bug 1750

The backfill scheduler will periodically release locks for other
  actions. If a job is held during the time that locks were released,
  that job might still have been scheduled by the backfill scheduler
  (i.e. it failed to check for a job with a priority of zero).
could be a root cause for bug 1750