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#!/bin/bash
set -evx
#module load CDFTOOLS/2.1-foss-2015a CDO NCO
function delete {
at now +7 days << EOF
rm -rf $WORKDIR
EOF
}
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msg='Your experiment crashed! Your workdir \($WORKDIR\) will be kept for one week from now and then deleted'
trap "echo $msg ; delete ; exit" SIGINT SIGHUP SIGTERM SIGSEGV SIGKILL EXIT
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#################################
#### User Defined Funtions ####
#################################
# check if args are ok and read options in config_file
if [ $# -ne 1 ] ; then
echo
echo "USAGE: config_file "
echo "For example: ./ocean_pp.new.bash /home/Earth/$user/es_git/ocean_diagnostics/config_file "
echo
exit 1
fi
config_file=$1
. ${config_file}
if [[ ${listpost[@]} =~ "psi" ]] ; then
echo "The list of diags require grid_U"
if [[ ${listpost[@]} =~ "moc" ]] ; then
echo "The list of diags require grid_V"
list_files=$(echo ${list_files} grid_V)
fi
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if [[ ${listpost[@]} =~ "ice" ]] || [[ ${listpost[@]} =~ "siasiesiv" ]]; then
echo "The list of diags contains ice"
list_files=$(echo ${list_files} icemod)
fi
###############################################################################
#
# moc needs to be computed before max_moc and area_moc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*moc*} != ${listpost[@]} ]] || [[ ${listpost[@]##*stc*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#moc} != ${listpost[@]:1} ]] ; then
listpost=( 'moc' "${listpost[@]#moc}" )
fi
fi
#
# psi needs to be computed before gyres
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*gyres*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#psi} != ${listpost[@]:1} ]] ; then
listpost=( 'psi' "${listpost[@]#psi}" )
fi
fi
#
# oce raw outputs need to be extracted before convection option
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*convection*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#ext_raw_oce} != ${listpost[@]:1} ]] ; then
listpost=( 'ext_raw_oce' "${listpost[@]#ext_raw_oce}" )
fi
fi
#
# 3d interpolation required before average T sections over longitudes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##TSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dtemp} != ${listpost[@]:1} ]] ; then
listpost=( '3dtemp' "${listpost[@]#3dtemp}" )
warning_T=.true.
fi
fi
if [[ ${listpost[@]##SSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dsal} != ${listpost[@]:1} ]] ; then
listpost=( '3dsal' "${listpost[@]#3dsal}" )
warning_S=.true.
fi
fi
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your new diagnostic relies on an already
# existing diagnotics, you might need similar lignes to the above ones
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
#
# Preparing WORKDIR and set of available functions
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
export WORKDIR=/scratch/Earth/${USER}/tmp/post_ocean/$$
mkdir -p $WORKDIR
cd $WORKDIR
source $PATHCOMMONOCEANDIAG/common_ocean_post.txt
#
# Interval of lead months be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') moni=09 ; syeari=1957 ; syearf=1957 ; insdate=1 ; typeoutput='MMO' ; NEMOVERSION='nemovar_O1L42' ;;
'glorys2v1') moni=01 ; syeari=1993 ; syearf=1993 ; insdate=1 ; typeoutput='MMO' ;;
esac
case $expid in
'nemovar_s4') rootout='/esnas/exp/ECMWF/NEMOVAR_S4/monthly_mean' ;;
'nemovar_combine') rootout='/esnas/exp/ECMWF/NEMOVAR_COMBINE/monthly_mean' ;;
'glorys2v1') rootout='/esnas/exp/MERCATOR/GLORYS2V1/monthly_mean';;
esac
if [[ ${listpost[@]##max_moc} != ${listpost[@]} ]] || [[ -z "$ltimef" ]] || [[ -z "$ltime0" ]] ; then
if [[ ! -z "$year0" ]] && [[ ! -z "$yearf" ]] ; then
ltime0=$(((${year0}-${syeari})*12+1))
ltimef=$(((${yearf}-${syeari}+1-(10#$moni+10)/12)*12))
fi
fi
mon0=$(( (10#$moni+$ltime0-2)%12+1 ))
monf=$(( (10#$moni+$ltimef-2)%12+1 ))
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#
# Check on the consistency between the chunk length and the leadtimes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $((($ltimef-$ltime0+1)%$chunklen)) != 0 || $((($ltime0-1)%$chunklen)) != 0 ]] ; then
echo "This a safety stop because we think you might have made a mistake in your configuration file"
echo "Unless you have run your experiment with a variable chunk length, you should have"
echo "a number of leadtimes to post-process that is a multiple of the chunken and the first"
echo "leadtime should be right after the end of a chunk"
echo "If you have run your experiment with a variable chunk length, please remove l.85-93 of ocean_pp.bash"
exit 1
fi
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# Loop on start dates
# ~~~~~~~~~~~~~~~~~~~~~
if [[ $intsdate -eq 0 ]] ; then intsdate=1 ; fi # if only one start date, user might set
# intsdates to 0 which leads to an infinite loop below
for ((yeari=$syeari;yeari<=$syearf;yeari=$(($yeari+intsdate)))) ; do
#
# Interval of years to be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
year0=$(($yeari+(10#$moni+$ltime0-2)/12))
yearf=$(($yeari+(10#$moni+$ltimef-2)/12))
for memb in ${listmemb[@]} ; do
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') get_nemovar ${expid} ${memb} ${year0} ${yearf} ${mon0} ${monf} "${list_files}"
'glorys2v1') get_glorys ${year0} ${yearf} ${mon0} ${monf} ;;
*) freqout=${rootout:${#rootout}-12} ; freqout=${freqout/_mean} ; freqout=${freqout/*\/}
get_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $chunklen $mod $typeoutput $freqout "${list_files}"
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esac
#
# Ready for the post-processing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter its call right here under the flag chosen
# Remember to consider both 'MMO' and 'diags' cases
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'ext_raw_oce')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ocean == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ocean == 'default' ]] ; then
lstextvar=( 'sosstsst' 'sosaline' 'somixhgt' 'somxl010' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo ${raw_vars_ocean[@]} |sed s/\ /,/g`
fi
fi
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if [ -z "$lstext" ] ; then
echo "The list of variables you wish to extract is not in your outputs"
exit 1
else
ncks -O -v ${lstext} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
# ncks -O -v ${lstext[@]} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'ext_raw_ice')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ice == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ice == 'default' ]] ; then
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lstextvar=( 'isnowthi' 'iicethic' 'ileadfra' 'iicetemp' 'ice_pres' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo $raw_vars_ice |sed s/\ /,/g`
fi
fi
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if [ -z "$lstext" ] ; then
echo "The list of variables you wish to extract is not in your outputs"
exit 1
else
ncks -O -v ${lstext} icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ice_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'heat_sal_mxl')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
heat_sal_mxl grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'psi')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
psi grid_U_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'gyres')
gyres psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION gyres_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300 5400 sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0 300 sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
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'temp_lev')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f temp_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeanvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper $level1 $level2 temp_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'sal_lev')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeanvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline $level1 $level2 sal_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
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'ohc_specified_layer')
if [ ! -f ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 300.0 ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300.0 800.0 ohc_2d_avg_300-800m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'vert_Tsections')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper $z_m $coord temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
;;
'vert_Ssections')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline $z_m $coord sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
fi
;;
'3dtemp')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
if [ ! -f regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_T ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'3dsal')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
if [ ! -f regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_S ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'TSec_ave190-220E')
[ ! -f TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'SSec_ave190-220E')
if [[ $typeoutput == 'MMO' ]] ; then
[ ! -f SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'moc')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
moc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'max_moc')
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 38 50 500 2000 max_moc_38N50N_500m-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40 40 0 10000 max_moc_40N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'stc')
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NPac_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SPac_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NAtl_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SAtl_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
;;
'area_moc')
if [ ! -f moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40.0 55.0 moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
if [ ! -f moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 30.0 40.0 moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'convection')
convection oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION convection_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'siasiesiv' )
if [ ! -f siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]||[ ! -f siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then #check if ? instead of N or S works
case $typeoutput in
'MMO' ) pref='icemod' ;;
'diags') pref='ice' ;;
esac
siasiesiv ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc tmp.nc
mv ice_N_tmp.nc siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv ice_S_tmp.nc siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'siasiesivsit_Arcticreg1')
case $typeoutput in
'MMO' ) pref='icemod' ;;
'diags') pref='ice' ;;
esac
if [[ $raw_regions_ice == '' ]] ; then
lstseas=$( cdo showvar mask_regions.nc )
else
if [[ $raw_regions_ice == 'default' ]] ; then
lstseas="Baffin_Bay Baltic_Sea Barents_Sea Beaufort_Sea Bering CanArch Chukchi_Sea CntArctic CntArcticRing1 CntArcticRing2 CntArcticRing3 CntArcticRing4 CntArcticRing5 CntArcticRing6 CntArcticRing7_Lincoln_Sea CntArcticRing8 CntArcticPrf1 CntArcticPrf2r CntArcticPrf3 CntArcticPrf4 East_Siberian_Sea1 Greenland_Sea Hudson Icelandic_Sea Irminger Japan1 Kara_Sea Laptev_Sea Labrador_Sea1 Norwegian_Sea Okhotsk StLawr"
else
lstseas=$( echo ${raw_regions_ice[@]} )
fi
fi
for sea in $lstseas ; do
siasiesiv ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc tmp.nc $sea
pbretonniere
committed
ncks -O -v sia ice_N_tmp.nc sia_N_tmp.nc
ncks -O -v sie ice_N_tmp.nc sie_N_tmp.nc
ncks -O -v siv ice_N_tmp.nc siv_N_tmp.nc
ncks -O -v sit ice_N_tmp.nc sit_N_tmp.nc
ncrename -h -v sia,sia_$sea sia_N_tmp.nc
ncrename -h -v sie,sie_$sea sie_N_tmp.nc
ncrename -h -v siv,siv_$sea siv_N_tmp.nc
ncrename -h -v sit,sit_$sea sit_N_tmp.nc
if [ -e sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
ncks -A sia_N_tmp.nc sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A sie_N_tmp.nc sie_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A siv_N_tmp.nc siv_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A sit_N_tmp.nc sit_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
rm -f sia_N_tmp.nc sie_N_tmp.nc siv_N_tmp.nc sit_N_tmp.nc ice_N_tmp.nc ice_S_tmp.nc
else
mv sia_N_tmp.nc sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv sie_N_tmp.nc sie_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv siv_N_tmp.nc siv_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv sit_N_tmp.nc sit_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
rm -f ice_N_tmp.nc ice_S_tmp.nc
fi
done
;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
case `echo $post | cut -c1` in
'x') kmin=0 ; kmax=0 ; start=2 ; mxl=1 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=25 ; kmax=42 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=23 ; kmax=46 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=45; kmax=75;;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=21 ; kmax=24 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=18 ; kmax=22 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=35; kmax=44;;
esac
;;
'u') kmin=1 ; start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmax=20 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmax=17 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmax=34;;
esac
;;
*) kmin="" ; kmax="" ; start=1 ; mxl=0 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'ohc') basin='Glob' ;;
*) basin=`echo $post | cut -c${start}-$((start+3))`
esac
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags')
pref='t3d'
ncks -A -v somxl010,somixhgt oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc t3d_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
esac
ohc ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heatc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $basin $mxl $kmin $kmax
;;
esac
done
# Removing the raw output from this start dates and this member
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
clean_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $typeoutput "${list_files}"
done
# Prepare storage : choose output directory and file name
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter the output directory and the prefix
# or your(s) output files under the flag chosen
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'area_moc') dirout='moc'; files=('moc_40N55N_1-2km' 'moc_30N40N_1-2km') ;;
'stc') dirout='moc' ; files=( 'NPac_stc_0N25N_0-200m' 'SPac_stc_25S0S_0-200m' 'NAtl_stc_0N25N_0-200m' 'SAtl_stc_25S0S_0-200m' ) ;;
'max_moc') dirout='moc' ; files=('max_moc_38N50N_500m-2km' 'max_moc_40N' ) ;;
'siasiesiv' ) dirout='ice' ; files=('siasiesiv_N' 'siasiesiv_S') ;;
'siasiesivsit_Arcticreg1' ) dirout='ice' ; files=('sia_Arcticreg1' 'sie_Arcticreg1' 'siv_Arcticreg1' 'sit_Arcticreg1') ;;
'moc') dirout='moc' ; files=('moc') ;;
'convection') dirout='moc' ; files=('convection') ;;
# 'ext_raw_ice') dirout='ice' ; files=('ice_raw') ;;
# 'ext_raw_oce') dirout='oce_raw' ; files=('oce_raw') ;;
'ext_raw_ice') dirout='ice' ; files=('ice') ;;
'ext_raw_oce') dirout='oce' ; files=('oce') ;;
'heat_sal_mxl') dirout='heatc' ; files=('heat_sal_mxl') ;;
'psi') dirout='psi' ; files=('psi') ;;
'gyres') dirout='psi' ; files=('gyres') ;;
'usalc') dirout='saltc' ; files=('sal_0-300m') ;;
Eleftheria Exarchou
committed
'temp_lev') dirout='temp_lev'${level1}-${level2} ; files=('temp_lev'${level1}-${level2}) ;;
'sal_lev') dirout='sal_lev'${level1}-${level2} ; files=('sal_lev'${level1}-${level2}) ;;
'lmsalc') dirout='saltc' ; files=('sal_300-5400m') ;;
'ohc_specified_layer') dirout='heatc' ; files=('ohc_2d_avg_0-300m' 'ohc_2d_avg_300-800m') ;;
'vert_Tsections') dirout='sections' ; files=('temp_0N' 'temp_45N' 'temp_45S' 'temp_30W' 'temp_80E' 'temp_180E') ;;
'vert_Ssections') dirout='sections' ; files=('sal_0N' 'sal_45N' 'sal_45S' 'sal_30W' 'sal_80E' 'sal_180E') ;;
'3dtemp') dirout='InterpT' ; files=('regular3dT') ;;
'3dsal') dirout='InterpS' ; files=('regular3dS') ;;
'TSec_ave190-220E') dirout='sections' ; files=('TSec_ave190-220E') ;;
'SSec_ave190-220E') dirout='sections' ; files=('SSec_ave190-220E') ;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
dirout='heatc'
file='heatc'
case `echo $post | cut -c1` in
'x') mxl=1 ; start=2 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='800-5350_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='855-5875_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='857-5902_'${file};;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='373-657_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='382-735_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='301-773_'${file};;
esac
;;
'u') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='0-315_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='0-322_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='0-271_'${file};;
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
esac
;;
*) mxl=0 ; start=1 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'NAtl') file='NAtl_10N65N_'${file} ;;
'TAtl') file='TAtl_30S30N_'${file};;
'NPac') file='NPac_10N70N_'${file} ;;
'TPac') file='TPac_30S30N_'${file} ;;
'Arct') file='Arc_65N90N_'${file} ;;
'Anta') file='Ant_90S60S_'${file} ;;
'TInd') file='TInd_30S30N_'${file} ;;
esac
if [[ $mxl == 1 ]] ; then
file='mxl_'$file
fi
files=( $file )
esac
pathout=${rootout}/${dirout}
mkdir -m ug+w -m o-w -p $pathout
for file in ${files[@]} ; do
prefix=${file}_${expid}_${yeari}${moni}01_fc
lsmbso=0-${listmemb[${#listmemb[@]}-1]}
#
# Merging the post-processed members together and with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lsyrsh=${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
lsmbsh=${listmemb[0]}-${listmemb[${#listmemb[@]}-1]}
lsmbsb=0-$((${listmemb[0]}-1))
if [ -e ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrsh} .
lsmbsh=0-${listmemb[${#listmemb[@]}-1]}
gather_memb ${prefix} _${lsyrsh} ${prefix}${lsmbsh}_${lsyrsh}
for jmemb in ${listmemb[@]} ; do
rm -f ${prefix}${jmemb}_${lsyrsh}
done
#
# Concatenating the result with the previous years if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your diagnostic provides yearly output
# you need to use the concat option rather than the ncrcat one below.
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
lsyrsb=${yeari}${moni}_$((year0-(1-(10#$mon0+10)/12)))$(printf "%02d" $(((mon0-13)%12+12)) ).nc
lsyrso=${yeari}${moni}_${yearf}$(printf "%02d" ${monf}).nc
if [ -e ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ] ; then
case $post in
'max_moc' ) concat ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} $(printf "%02d" ${monf}) ${prefix}${lsmbsh}_${lsyrso} ;;
*) ncrcat -O ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} ${prefix}${lsmbsh}_${lsyrso} ;;
esac
else
lsyrso=$lsyrsh
fi
#
# Merging the result with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $lsyrsh != $lsyrso ]] && [[ -e ${pathout}/${prefix}${lsmbsb}_${lsyrso} ]] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrso} .
gather_memb ${prefix} _${lsyrso} ${prefix}${lsmbso}_${lsyrso}
else
lsmbso=$lsmbsh
fi
#
# Storing and cleaning
# ~~~~~~~~~~~~~~~~~~~~~
cp ${prefix}${lsmbso}_${lsyrso} ${pathout}/. || { if [ -e ${pathout}/${prefix}${lsmbso}_${lsyrso} ];
then
echo "${prefix}${lsmbso}_${lsyrso} already exists in ${pathout}"
sleep 5
else
echo " problem writing file in ${pathout} directory"
exit
fi
}
rm -f ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrso} ${prefix}${lsmbsb}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrso} ${prefix}${lsmbso}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ${prefix}${lsmbsb}_${lsyrsh}
done
done
done
trap - EXIT