Develop debug mask

Sorted out the problem: not creating symbolic links with the masks, because they already existed, however the mask could have changed along the time and the symbolic link must be remade to a new file. The solution --> Now it copies the mask and overwrites it if it already exists.

@pabretonniere @eexarchou

See merge request !15

Changed the way of copying mask.regions, if it exists it doesn't copy anything. I noticed when introducing other changes

Sorted out the problem: not creating symbolic links with the mesh.masks, because it already existed, however the mask could have changed during the time, and it must be remade. Now it copies the mask and overwrites if it already exists

Remove path to Virginie's home for cdfheatc-cfu as it is now the same as the one included in the module environment

Develop bugfixes valentina

See merge request !14

Check if files already exist before creating symlinks (in case of rerunning remotely the script in the same workdir)

Remove user confirmation to overwrite old files (in case of rerunning remotely the script in the same workdir)

Correct 2nd bug in vertmeansal (valid_min) + change format of head and tail commands to make it work with older versions

Develop bugi025

Hi @rcruzgar
In order to follow up on the changes you did in develop-bugi025 the standard procedure is to open a merge request into master branch.
@pabretonniere how do you want to proceed for testing it before including it into master ?
@vsicardi needs this bug fix for going on with her experiment.
Regards

See merge request !13

Add Ec3.0_O25L75 as config where to rename icevar

solves issue es/auto-ecearth3#32

See merge request !12

Develop bugs

Hi,

  A few more bugfixes that I did a few days ago

Best regards
Virginie

See merge request !11

Develop sea ice

Extension of sea ice dignostic to calculate sia,sie,sit and siv over the regions in the Arctic. Perhaps Francois Massonnet could test this as well.

See merge request !6

Develop bugs

Hi,

   I have just corrected a bug in the ohc function. cdo sometimes change the name of the dimensions, in that case from x to x_2, which prevents the cdftools to work properly. I have corrected this renaming when it happens on tmpohc.nc in the ohc function.

Best regards
Virginie

Develop get monthly from daily

Hi,

   In this branch, I have modified get_diagsMMO so that when the user requests monthly mean variables, the raw daily means from the MMO files will also be concatenated and monthly means will be computed from these daily means and they will be added to the file containing the raw monthly means.

Best regards
Virginie

Develop security check

Hi,

   I have just added two security checks that stop if the list of variables that the user wants to extract from his/her input files is not in these input files.

Best regards
Virginie

Develop exit signal

cdo can change the naming of the dimensions which prevents cdftools to work properly; this is now corrected in the ohc function in case it happens

When requesting monthly mean outputs, the daily mean outputs will also be concatenated and monthly means built from these daily means

Security check for the option ext_raw_ice and ext_raw_oce to make sure the variables requested are in the input files