Minor mods to man page html generation

Reverted back the change in get_basil_version, and made it a static var, only compile checked so far.

    scripts.

    command. Dependent upon .rpmmacros parameter of "%_with_srun2aprun"

Just use whichever StorageType plugin the user specifies to the configurator

Patch from Bill Brophy

    --cpus-per-task option. Patch from Martin Perry, Bull.

This allows scripted modification of job records, by exposing the
 * job_ptr->direct_set_prio
 * job_ptr->priority
 * job_ptr->details->nice
fields to the job_submit.lua script.

This allows the job_submit plugin to directly set priority values. If it
assigns a priority value different from 0 and NO_VAL, the priority is marked
as "fixed" via job_ptr->direct_set_prio.

To enable this, the permission check for directly set priority is now done
before calling the job_submit plugin, which in addition also allows to 
influence the nice value of the job via the plugin.

This reorders the code of _job_create() to the effect that the job_submit plugin
is able to put a job on hold (by setting the job priority to 0). To prevent the
user from releasing such jobs, jobs put on hold by the job_submit plugin use
WAIT_HELD rather than WAIT_HELD_USER.

This increases robustness in releasing ALPS reservations. Previously
the reservation was only released through
 * select_g_job_fini() for interactive (salloc) sessions;
 * batch_finish() by slurmstepd for batch sessions.

This introduces a single point of failure for batch jobs, since a failure
of batch_finish() would mean that the reservation could only be released
much later, through the detection of orphaned ALPS reservations in
basil_inventory().

For batch jobs that terminate normally this means that the RELEASE method is
called twice: first in job_complete(), and then in batch_finish(). The Basil
1.2 design document by Ben Landsteiner (dated 15 Feb 2011) suggests in section
3.3.5 repeated calls of RELEASE as one possible way of improving the response
of the RELEASE method. There will be additional "entry not found" messages in
the apschedMMDD logs, but (due to the preceding patch) not in the SLURM logs.

For jobs that have to be terminated (e.g. job_timed_out, job_requeue, job_fail),
this patch will mean that the RELEASE is called much sooner and thus is 
expected to improve efficiency.

For interactive salloc sessions that are cancelled via scancel, there is now
no longer a warning message about the no longer existing ALPS reservation
(since the release happens first through select_p_job_signal and then through
 job_complete -> deallocate_nodes -> select_p_job_fini).

For robustness, it does make sense calling the RELEASE method multiple times.

The Basil 1.2 document by Ben Landsteiner, dated 15th Feb 2011, suggests in
section 3.3.5, "Improve RELEASE method response" the following:

 "Periodically send RELEASE method requests until the RELEASE method
  response indicates the reservation is gone (via an error response)".

The typical error message for this case is (also shown in the document on page 11):

[2011-04-13T17:57:35] error: PERMANENT ALPS BACKEND error: ALPS error: apsched: No entry for resId 2087
[2011-04-13T17:57:35] sched: Cancel of JobId=5730 by UID=21215, usec=107543

There is already at least 1 use case for this type of error: cancelling a salloc sesion via scancel:
 1. scancel causes job_signal() to be invoked,
 2. job_signal() defers to select_g_job_signal(),
    - select/cray:select_p_job_signal() calls do_basil_release() before forwarding SIGKILL,
    - at this stage the reservation is already released,
 3. in the likely case of a running salloc session, job_signal() then calls deallocate_nodes(),
 4. this calls select_g_job_fini(),
    - the salloc default action for select/cray:select_p_job_fini() is to call do_basil_release(),
    - since at this stage the reservation has already been released, the error message results.

I don't like this error message myself, but avoiding it in all call paths is complicated. Also,
for robustness, I would very much prefer that do_basil_release() is always called from
deallocate_nodes().

Hence this patch creates a custom error class for the case "no entry for resId xxx". This
allows the calling function to still catch the error, but the unnecessary warning is no
longer printed in the logfiles.

The callers of this method are:
 * do_basil_release() - which already is set up to handle error/non-error case;
 * basil_safe_release() - this does not extra error checking, since it is called
   when trying to remove orphaned reservations, any failure in attempting to 
   release the reservation will result in repeated "orphaned ALPS reservation ..."
   messages.select/cray: special case for "no such resId"

For robustness, it does make sense calling the RELEASE method multiple times.

The Basil 1.2 document by Ben Landsteiner, dated 15th Feb 2011, suggests in
section 3.3.5, "Improve RELEASE method response" the following:

 "Periodically send RELEASE method requests until the RELEASE method
  response indicates the reservation is gone (via an error response)".

The typical error message for this case is (also shown in the document on page 11):

[2011-04-13T17:57:35] error: PERMANENT ALPS BACKEND error: ALPS error: apsched: No entry for resId 2087
[2011-04-13T17:57:35] sched: Cancel of JobId=5730 by UID=21215, usec=107543

There is already at least 1 use case for this type of error: cancelling a salloc sesion via scancel:
 1. scancel causes job_signal() to be invoked,
 2. job_signal() defers to select_g_job_signal(),
    - select/cray:select_p_job_signal() calls do_basil_release() before forwarding SIGKILL,
    - at this stage the reservation is already released,
 3. in the likely case of a running salloc session, job_signal() then calls deallocate_nodes(),
 4. this calls select_g_job_fini(),
    - the salloc default action for select/cray:select_p_job_fini() is to call do_basil_release(),
    - since at this stage the reservation has already been released, the error message results.

I don't like this error message myself, but avoiding it in all call paths is complicated. Also,
for robustness, I would very much prefer that do_basil_release() is always called from
deallocate_nodes().

Hence this patch creates a custom error class for the case "no entry for resId xxx". This
allows the calling function to still catch the error, but the unnecessary warning is no
longer printed in the logfiles.

The callers of this method are:
 * do_basil_release() - which already is set up to handle error/non-error case;
 * basil_safe_release() - this does not extra error checking, since it is called
   when trying to remove orphaned reservations, any failure in attempting to 
   release the reservation will result in repeated "orphaned ALPS reservation ..."
   messages.

This patch implements the same principle as an earlier one to fix issues
when signalling aprun job steps via apkill: to avoid race conditions
where further aprun lines get started while the current one is still in
progress, always release the reservation first.

This refactors the code to parse Basil 4.0 response data, removing
code that is applicable to both Basil 3.1 and 4.0.

    SLURM's logic used to support Cray systems.

the key and value (e.g. "-N2" gets translated to "-N 2" for the perl parser).

This is so that the select/cray plugin can read its
configuration file and still be used by the perl 
wrappers.

This is the size of the container ID in the current SGI_JOB (PAGG)
library.

    which is a wrapper over Cray's aprun command and supports many srun
    options. Without this option, the srun command will advise the user
    to use the aprun command.

    which is a wrapper over Cray's aprun command and supports many srun
    options. Without this option, the srun command will advise the user
    to use the aprun command.

    --resv-ports option is used.