burst_buffer/cray - Fix for script creating or deleting persistent buffer
    would fail "paths" operation and hold the job.
bug 2624

and it doesn't meet basic requirements.

burst_buffer/cray - Decrement job's prolog_running counter if pre_run fails.
bug 2621

If a job is no longer in configuring state, then clear the prolog_running
  counter on slurmctld restart or reconfigure.
bug 2621

When determining when a pending job will be able to start, rather
  than testing after removing each running job and trying to schedule
  the pending jobs, remove multiple jobs that all end about the
  same time before testing. This reduces the number of calls to
  the job placement logic, which is time consuming.

Fix for job "--contiguous" option that could cause job allocation/launch
    failure or slurmctld crash.
bug 2573

This reverts commit f559a55c.

constraints mattered in a job.

Details include:
A job doesn't request memory but the system is running
with CR_*MEMORY with no default memory limit and the job requests nodes
with features of different sizes.  Previously the order of constraints
mattered where the smaller memory node would need to be requested first
or the job would fail.

Bug 2608

Previous logic would get an account and/or QOS time limit and use
  that value to overwrite the incoming RPC's NO_VAL value, which
  would change a job's time limit when changing an unrelated
  field (e.g. priority, QOS, etc.).
bug 2610

Fix backfill scheduler race condition that could cause invalid pointer in
    select/cons_res plugin. Bug introduced in 15.08.9, commit:
    efd9d35e

The scenario is as follows
1. Backfill scheduler is running, then releases locks
2. Main scheduling loop starts a job "A"
3. Backfill scheduler resumes, finds job "A" in its queue and
   resets it's partition pointer.
4. Job "A" completes and tries to remove resource allocation record
   from select/cons_res data structure, but fails to find it because
   it is looking in the table for the wrong partition.
5. Job "A" record gets purged from slurmctld
6. Select/cons_res plugin attempts to operate on resource allocation
   data structure, finds pointer into the now purged data structure
   of job "A" and aborts or gets SEGV
Bug 2603

canceled while launching.

Power/cray: Don't specify NID list to Cray APIs. If any of those nodes are
    not in a ready state, the API returned an error for ALL nodes rather than
    valid data for nodes in ready state.
bug 2332

and retries are done making the error message a little misleading.

rollup would effectively never run again.

bug 2575

and sort of bug 2596

There was a subtle bug in how tasks were bound to CPUs which could result
in an "infinite loop" error. The problem was various socket/core/threasd
calculations were based upon the resources allocated to a step rather than
all resources on the node and rounding errors could occur. Consider for
example a node with 2 sockets, 6 cores per socket and 2 threads per core.
On the idle node, a job requesting 14 CPUs is submitted. That job would
be allocted 4 cores on the first socket and 3 cores on the second socket.
The old logic would get the number of sockets for the job at 2 and the
number of cores at 7, then calculate the number of cores per socket at
7/2 or 3 (rounding down to an integer). The logic layouting out tasks
would bind the first 3 cores on each socket to the job then not find any
remaining cores, report the "infinite loop" error to the user, and run
the job without one of the expected cores. The problem gets even worse
when there are some allocated cores on a node. In a more extreme case,
a job might be allocated 6 cores on one socket and 1 core on a second
socket. In that case, 3 of that job's cores would be unused.
bug 2502

This is a revision to commit 1ed38f26
The root problem is that a pthread is passed an argument which is
a pointer to a variable on the stack. If that variable is over-written,
the signal number recieved will be garbage, and that bad signal
number will be interpretted by srun to possible abort the request.

The previous commit obviously fixed a problem, but introduced a different
set of problems. This will be pursued later, perhaps in version 16.05.

With some configurations and systems, errors of the following sort were
occuring:
task/cgroup: task[1] infinite loop broken while trying to provision compute elements using block
task/cgroup: task[1] unable to set taskset '0x0'

burst_buffer/cray - If the pre-run operation fails then don't issue
    duplicate job cancel/requeue unless the job is still in run state. Prevents
    jobs hung in COMPLETING state.
bug 2587

isn't kept up to date in the cache.

Fix gang scheduling resource selection bug which could prevent multiple jobs
    from being allocated the same resources. Bug was introduced in 15.08.6,
    commit 44f491b8

Here's how to reproduce on smd-server with 2 sockets, 6 cores per
socket and 2 threads per core, just run the following command line
3 times in quick succession (all active at the same time):
srun --cpus-per-task=4 -m block sleep 30
What was happening is the first job would be allocated cores 0+1
The second job would be allocated cores 2+3
The thrid job would test use of cores 0-3 then exit because the
 job only needs 4 CPUs. The resulting core binding would include
 NO CPUs. The new logic tests that the core being considered for
 use actually has some resources available to the job before
 updating the counter which is being tested against the needed
 CPU counter.

Specifically add the HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM flag when
loading configuration from HWLOC library. Previous logic in
task/cgroup did not do this, which was different behaviour from
how slurmd gets configuration information. Here's the HWLOC
documentation:
HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM
Detect the whole system, ignore reservations and offline settings.
Gather all resources, even if some were disabled by the administrator.
For instance, ignore Linux Cpusets and gather all processors and memory
nodes, and ignore the fact that some resources may be offline.

Without this flag, I was rarely observing a bad core count, which
resulted in the logic layout out tasks wrong and generating an error:
task/cgroup: task[0] infinite loop broken while trying to provision compute elements using cyclic

bug 2502

burst_buffer/cray: Set environment variables just before starting job rather
    than at job submission time to reflect persistent buffers created or
    modified while the job is pending.
bug 2545

buffer is found.

Bug 2576

What happened was a function was doing a double read lock which isn't
awesome to begin with, but not really horrible (if all you are doing is
read locks anyway).  The problem was after the first lock was locked a
different thread was going for a write lock and so when the second
read lock came in it created deadlocked.

Avoid possibly aborting srun that gets simultaneous SIGSTOP+SIGCONT while
    creating the job step. The result is that the signal hanlder gets a
    argument (the signal received) of zero.

Here's a log, window 1:
$ srun hostname
srun: Job step creation temporarily disabled, retrying
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 18
srun: I Got signal 0
srun: Cancelled pending job step

Window 2:
$  kill -STOP 18696 ; kill -CONT 18696
$  kill -STOP 18696 ; kill -CONT 18696
$  kill -STOP 18696 ; kill -CONT 18696
....

bug 2494

The uid is used as part of the hash function, must remove old reference
and recalculate if it may change, otherwise _delete_assoc_hash
will not find it again when the association is removed, causing
slurmctld to segfault.

Bug 2560.

Previous gang scheduling logic maintained information about resources
  originally allocated to the job and made scheduling decisions on
  that basis.
bug 2494

Update gang scheduling table when job manually suspended or resumed. Prior
    logic could mess up job suspend/resume sequencing.
bug 2494

time.

https://bugs.schedmd.com/show_bug.cgi?id=2547

The code just wasn't fully baked before and was probably written before
a lot of the other supporting code was done i.e
assoc_mgr_set_assoc|qos_tres_cnt were done specifically for this kind of
thing.  Many of the usage structures weren't realloced either as well as
the tres_cnt local to each qos and assoc wasn't updated.  So all in all
pretty bad code - bad Danny.  This makes sure all this sets up and no
memory corruption happens.

Generate burst buffer use completion email immediately afer teardown
    completes rather than at job purge time (likely minutes later).
bug 2539

Change burst buffer use completion message from
    "SLURM Job_id=1360353 Name=tmp Staged Out, StageOut time 00:01:47" to
    "SLURM Job_id=1360353 Name=tmp StageOut/Teardown time 00:01:47"